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Efficient count-based models improve power and robustness for large-scale single-cell eQTL mapping

Nature · By Zixuan Eleanor Zhang ·

The Brief

  • The study presents jaxQTL, a count-based pseudobulk framework for single-cell eQTL mapping.
  • When applied to OneK1K data, jaxQTL discovers more eGenes than existing methods.
  • The source abstract describes the framework as efficient but is truncated, so run-time details are not confirmed here.

Why it matters

Single-cell eQTL studies depend on statistical methods that detect genetic effects on gene expression, and a method that finds more eGenes could improve power in large cell-type-resolved genetic studies.

Who’s affected

  • statistical geneticists
  • researchers running single-cell eQTL studies

Nature Genetics, Published online: 10 November 2026; doi:10.1038/s41588-026-02830-5 This study presents jaxQTL, an efficient count-based pseudobulk single-cell eQTL mapping framework. When applied to OneK1K data, jaxQTL discovers more eGenes than existing methods while running…

Timeline

  1. Published online in Nature Genetics (doi:10.1038/s41588-026-02830-5)

  2. nature.com

    Efficient count-based models improve power and robustness for large-scale single-cell eQTL mapping

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    Efficient count-based models improve power and robustness for large-scale single-cell eQTL mapping – The Morning Science